=>> Building science/py-py3Dmol build started at Sun Dec 15 20:28:36 EST 2024 port directory: /usr/ports/science/py-py3Dmol package name: py311-py3Dmol-2.4.2 building for: FreeBSD ghostbsd-14-ghostbsd_ports-job-26 14.1-STABLE FreeBSD 14.1-STABLE 1401502 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 528 Nov 19 12:01 /usr/ports/science/py-py3Dmol/Makefile Ports top last git commit: b4bf4e75f8c6 Ports top unclean checkout: no Port dir last git commit: 212f90c9a362 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1_1 Host OSVERSION: 1401501 Jail OSVERSION: 1401502 Job Id: 26 !!! Jail is newer than host. (Jail: 1401502, Host: 1401501) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1401502 UNAME_v=FreeBSD 14.1-STABLE 1401502 UNAME_r=14.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1_1 MASTERMNT=/zroot/poudriere/data/.m/ghostbsd-14-ghostbsd_ports/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=su GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/zroot/poudriere/data/.m/ghostbsd-14-ghostbsd_ports/26/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=ghostbsd-14-ghostbsd_ports SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/zroot/poudriere/data/.m/ghostbsd-14-ghostbsd_ports/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py3Dmol" EXAMPLESDIR="share/examples/py3Dmol" DATADIR="share/py3Dmol" WWWDIR="www/py3Dmol" ETCDIR="etc/py3Dmol" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py3Dmol DOCSDIR=/usr/local/share/doc/py3Dmol EXAMPLESDIR=/usr/local/share/examples/py3Dmol WWWDIR=/usr/local/www/py3Dmol ETCDIR=/usr/local/etc/py3Dmol --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- ulimit: can't get limit: Invalid argument cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License WTFPL accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-py3Dmol-2.4.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [ghostbsd-14-ghostbsd_ports-job-26] Installing pkg-1.21.3... [ghostbsd-14-ghostbsd_ports-job-26] Extracting pkg-1.21.3: .......... done ===> py311-py3Dmol-2.4.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-py3Dmol-2.4.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License WTFPL accepted by the user => py3Dmol-2.4.2.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/py3Dmol/py3Dmol-2.4.2.tar.gz py3Dmol-2.4.2.tar.gz 7724 B 23 MBps 00s ===> Fetching all distfiles required by py311-py3Dmol-2.4.2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License WTFPL accepted by the user ===> Fetching all distfiles required by py311-py3Dmol-2.4.2 for building => SHA256 Checksum OK for py3Dmol-2.4.2.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License WTFPL accepted by the user ===> Fetching all distfiles required by py311-py3Dmol-2.4.2 for building ===> Extracting for py311-py3Dmol-2.4.2 => SHA256 Checksum OK for py3Dmol-2.4.2.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-py3Dmol-2.4.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-py3Dmol-2.4.2 depends on package: py311-ipython>0 - not found ===> Installing existing package /packages/All/py311-ipython-8.18.1_1.pkg [ghostbsd-14-ghostbsd_ports-job-26] Installing py311-ipython-8.18.1_1... [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-decorator-5.1.1_1... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing python311-3.11.11... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing gettext-runtime-0.22.5... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing indexinfo-0.3.1... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting indexinfo-0.3.1: .... done [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting gettext-runtime-0.22.5: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing libffi-3.4.6... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting libffi-3.4.6: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing mpdecimal-4.0.0... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting mpdecimal-4.0.0: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing readline-8.2.13_2... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting readline-8.2.13_2: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting python311-3.11.11: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-decorator-5.1.1_1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-jedi-0.19.1... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-parso-0.8.4... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing py311-setuptools-63.1.0_1... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting py311-setuptools-63.1.0_1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-parso-0.8.4: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-jedi-0.19.1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-matplotlib-inline-0.1.6... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-traitlets-5.14.3... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-traitlets-5.14.3: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-matplotlib-inline-0.1.6: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-pexpect-4.9.0_1... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-ptyprocess-0.7.0... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-ptyprocess-0.7.0: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-pexpect-4.9.0_1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-prompt-toolkit-3.0.48... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-wcwidth-0.2.8... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-wcwidth-0.2.8: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-prompt-toolkit-3.0.48: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-pygments-2.18.0... [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-pygments-2.18.0: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-sqlite3-3.11.11_7... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing sqlite3-3.46.1,1... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing libedit-3.1.20240808,1... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting libedit-3.1.20240808,1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting sqlite3-3.46.1,1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-sqlite3-3.11.11_7: ........ done [ghostbsd-14-ghostbsd_ports-job-26] `-- Installing py311-stack-data-0.6.3_1... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-asttokens-2.4.1... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Installing py311-six-1.16.0_1... [ghostbsd-14-ghostbsd_ports-job-26] | | `-- Extracting py311-six-1.16.0_1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-asttokens-2.4.1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-executing-2.1.0... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-executing-2.1.0: .......... done [ghostbsd-14-ghostbsd_ports-job-26] | `-- Installing py311-pure-eval-0.2.3... [ghostbsd-14-ghostbsd_ports-job-26] | `-- Extracting py311-pure-eval-0.2.3: .......... done [ghostbsd-14-ghostbsd_ports-job-26] `-- Extracting py311-stack-data-0.6.3_1: .......... done [ghostbsd-14-ghostbsd_ports-job-26] Extracting py311-ipython-8.18.1_1: .......... done ===== Message from python311-3.11.11: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-py3Dmol-2.4.2 depends on package: py311-ipython>0 - found ===> Returning to build of py311-py3Dmol-2.4.2 ===> py311-py3Dmol-2.4.2 depends on package: py311-setuptools>=63.1.0 - found ===> py311-py3Dmol-2.4.2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-py3Dmol-2.4.2 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-py3Dmol-2.4.2 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running build running build_py creating build creating build/lib creating build/lib/py3Dmol copying py3Dmol/__init__.py -> build/lib/py3Dmol =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-py3Dmol-2.4.2 depends on package: py311-ipython>0 - found ===> py311-py3Dmol-2.4.2 depends on package: py311-setuptools>=63.1.0 - found ===> py311-py3Dmol-2.4.2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-py3Dmol-2.4.2 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /wrkdirs/usr/ports/science/py-py3Dmol/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-py3Dmol/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-py3Dmol/work-py311/stage/usr/local/lib/python3.11/site-packages/py3Dmol copying build/lib/py3Dmol/__init__.py -> /wrkdirs/usr/ports/science/py-py3Dmol/work-py311/stage/usr/local/lib/python3.11/site-packages/py3Dmol byte-compiling /wrkdirs/usr/ports/science/py-py3Dmol/work-py311/stage/usr/local/lib/python3.11/site-packages/py3Dmol/__init__.py to __init__.cpython-311.pyc writing byte-compilation script '/tmp/tmps2mg65ms.py' /usr/local/bin/python3.11 /tmp/tmps2mg65ms.py removing /tmp/tmps2mg65ms.py running install_egg_info running egg_info writing py3Dmol.egg-info/PKG-INFO writing dependency_links to py3Dmol.egg-info/dependency_links.txt writing requirements to py3Dmol.egg-info/requires.txt writing top-level names to py3Dmol.egg-info/top_level.txt reading manifest file 'py3Dmol.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'py3Dmol.egg-info/SOURCES.txt' Copying py3Dmol.egg-info to /wrkdirs/usr/ports/science/py-py3Dmol/work-py311/stage/usr/local/lib/python3.11/site-packages/py3Dmol-2.4.2-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-py3Dmol/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-12-16T01:28:36+0000' 'PKG_NOTE_ports_top_git_hash=b4bf4e75f8c6' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=212f90c9a362' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.1_1' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-py3Dmol-2.4.2 ===> Building py311-py3Dmol-2.4.2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-py3Dmol-2.4.2 build of science/py-py3Dmol@py311 | py311-py3Dmol-2.4.2 ended at Sun Dec 15 20:29:26 EST 2024 build time: 00:00:51